KOGA, Nobuyasu: search on Z-Library

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1

Control over overall shape and size in de novo designed proteins

Lin, Yu-Ru, Koga, Nobuyasu, Tatsumi-Koga, Rie, Liu, Gaohua, Clouser, Amanda F., Montelione, Gaetano T., Baker, David

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

2

Principles for designing ideal protein structures

Koga, Nobuyasu, Tatsumi-Koga, Rie, Liu, Gaohua, Xiao, Rong, Acton, Thomas B., Montelione, Gaetano T., Baker, David

Journal:

Year:

2012

Language:

english

File:

PDF, 2.17 MB

english, 2012

3

Forced protein unfolding leads to highly elastic and tough protein hydrogels

Fang, Jie, Mehlich, Alexander, Koga, Nobuyasu, Huang, Jiqing, Koga, Rie, Gao, Xiaoye, Hu, Chunguang, Jin, Chi, Rief, Matthias, Kast, Juergen, Baker, David, Li, Hongbin

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 947 KB

english, 2013

4

Identification of U11snRNA as an endogenous agonist of TLR7-mediated immune pathogenesis

Negishi, Hideo, Endo, Nobuyasu, Nakajima, Yuki, Nishiyama, Tatsuaki, Tabunoki, Yuichiro, Nishio, Junko, Koshiba, Ryuji, Matsuda, Atsushi, Matsuki, Kosuke, Okamura, Tomohisa, Negishi-Koga, Takako, Ichi

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.17 MB

2019

5

Stereoselective reactions. XVII. Absolute structure-cytotoxic activity relationships of steganacin congeners and analogs

Tomioka, Kiyoshi, Ishiguro, Tsuneo, Mizuguchi, Hidemichi, Komeshima, Nobuyasu, Koga, Kenji, Tsukagoshi, Shigeru, Tsuruo, Takashi, Tashiro, Tazuko, Tanida, Seiichi, Kishi, Toyokazu

Journal:

Journal of Medicinal Chemistry

Year:

1991

Language:

english

File:

PDF, 513 KB

english, 1991

6

Stereochemical aspects of asymmetric diels-alder reaction catalyzed by chiral alkoxyaluminum dichlorides

Hiroyuki Takemura, Nobuyasu Komeshima, Ichiro Takahashi, Shun-ichi Hashimoto, Nobuo Ikota, Kiyoshi Tomioka, Kenji Koga

Journal:

Tetrahedron Letters

Year:

1987

Language:

english

File:

PDF, 224 KB

english, 1987

7

Exploration of Novel Alpha-Beta Protein Folds by De Novo Design

Minami, Shintaro, Koga, Rie, Chikenji, George, Sugiki, Toshihiko, Kobayashi, Naohiro, Koga, Nobuyasu

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 47 KB

2020

8

1SB-01 Computational De Novo Design of Protein Structures(1SB Exploring design principles of life,The 49th Annual Meeting of the Biophysical Society of Japan)

Koga, Nobuyasu, Koga(Tatsumi), Rie, Liu, Gaohua, Xiao, Rong, Montelione, Gaetano T., Baker, David

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 219 KB

english, 2011

9

Asymmetric Diels?Alder reaction catalysed by chiral alkoxyaluminium dichloride

Hashimoto, Shun-ichi, Komeshima, Nobuyasu, Koga, Kenji

Journal:

Journal of the Chemical Society Chemical Communications

Year:

1979

Language:

english

File:

PDF, 180 KB

english, 1979

10

Biomolecular Coarse-Grained Simulation Program CafeMol

Kenzaki, Hiroo, Koga, Nobuyasu, Fujiwara, Shinji, Hori, Naoto, Kanada, Ryo, Okazaki, Kei-ichi, Yao, Xin-Qiu, Li, Wenfei, Takada, Shoji

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 34 KB

english, 2010

11

2P145 Mechanical principle of the motor protein KIF1A studied by molecular dynamics simulation(Molecular motors,Poster Presentations)

Kuwata, Takeshi, Okazaki, Kei-ichi, Tatsumi, Rie, Koga, Nobuyasu, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2007

File:

PDF, 229 KB

2007

12

Cyclic oligomer design with de novo αβ-proteins

Lin, Yu-Ru, Koga, Nobuyasu, Vorobiev, Sergey M., Baker, David

Journal:

Protein Science

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

13

Roles of native topology and chain-length scaling in protein folding: A simulation study with a Gō-like model

Nobuyasu Koga, Shoji Takada

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 453 KB

english, 2001

14

Rotation of the engineered F1-ATPase with non-catalytic α-type P-loops

Ueno, Hiroshi, Koga, Rie, Masaike, Tomoko, Koga, Nobuyasu, Noji, Hiroyuki

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2018

File:

PDF, 53 KB

2018

15

Design of Globin-Like Complicated Folds

Sakuma, Koya, Suzuki, Kano, Kosugi, Takahiro, Murata, Takeshi, Sugiki, Toshihiko, Kobayashi, Naohiro, Kobayashi, Naoya, Koga, Rie, Koga, Nobuyasu

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 47 KB

2020

16

Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions

Swaminathan, Vinay, Kalappurakkal, Joseph Mathew, Mehta, Shalin B., Nordenfelt, Pontus, Moore, Travis I., Koga, Nobuyasu, Baker, David A., Oldenbourg, Rudolf, Tani, Tomomi, Mayor, Satyajit, Springer,

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.24 MB

english, 2017

17

Identification of U11snRNA as an endogenous agonist of TLR7-mediated immune pathogenesis

Negishi, Hideo, Endo, Nobuyasu, Nakajima, Yuki, Nishiyama, Tatsuaki, Tabunoki, Yuichiro, Nishio, Junko, Koshiba, Ryuji, Matsuda, Atsushi, Matsuki, Kosuke, Okamura, Tomohisa, Negishi-Koga, Takako, Ichi

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.17 MB

english, 2019

18

Robust folding of a de novo designed ideal protein even with most of the core mutated to valine

Koga, Rie, Yamamoto, Mami, Kosugi, Takahiro, Kobayashi, Naohiro, Sugiki, Toshihiko, Fujiwara, Toshimichi, Koga, Nobuyasu

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.75 MB

2020

19

Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration

Nordenfelt, Pontus, Moore, Travis I., Mehta, Shalin B., Kalappurakkal, Joseph Mathew, Swaminathan, Vinay, Koga, Nobuyasu, Lambert, Talley J., Baker, David, Waters, Jennifer C., Oldenbourg, Rudolf, Tan

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 4.77 MB

english, 2017

20

1H1648 P22 Computational De Novo Design of Protein Structures(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Koga, Nobuyasu, Koga(Tatsumi), Rie, Liu, Gaohua, Xiao, Rong, Montelione, Gaetano T., Baker, David

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 248 KB

english, 2011

21

Efficacy of Dextromethorphan and Cyclosporine A for Acute Encephalopathy

Matsuo, Muneaki, Maeda, Toshiyuki, Ono, Nobuyasu, Sugihara, Susumu, Kobayashi, Ikuko, Koga, Daisuke, Hamasaki, Yuhei

Journal:

Pediatric Neurology

Year:

2013

Language:

english

File:

PDF, 558 KB

english, 2013

22

Principles for Designing Ideal Protein Structures

TATSUMI-KOGA, Rie, KOGA, Nobuyasu

Journal:

Seibutsu Butsuri

Year:

2013

File:

PDF, 1.28 MB

2013

23

Consistency principle for protein design

Koga, Rie, Koga, Nobuyasu

Journal:

Biophysics and Physicobiology

Year:

2019

File:

PDF, 1.93 MB

2019

24

Restricted sidechain plasticity in the structures of native proteins and complexes

Sarel J. Fleishman, Sagar D. Khare, Nobuyasu Koga, David Baker

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 296 KB

english, 2011

25

CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

Kenzaki, Hiroo, Koga, Nobuyasu, Hori, Naoto, Kanada, Ryo, Li, Wenfei, Okazaki, Kei-ichi, Yao, Xin-Qiu, Takada, Shoji

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 1.98 MB

english, 2011

26

S09A4 Rotary mechanisms of F1-ATPase revealed by molecular simulations(Mechanism of F_1-ATPase Molecular Motor-A Cross Talk among Single Molecule, Structural Biology, and Molecular Simulation Studies-)

Koga, Nobuyasu, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2007

File:

PDF, 273 KB

2007

27

ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells

Murakoshi, Hideji, Horiuchi, Hiroshi, Kosugi, Takahiro, Onda, Maki, Sato, Aiko, Koga, Nobuyasu, Nabekura, Junichi

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.62 MB

english, 2019

28

RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite

Fleishman, Sarel J., Leaver-Fay, Andrew, Corn, Jacob E., Strauch, Eva-Maria, Khare, Sagar D., Koga, Nobuyasu, Ashworth, Justin, Murphy, Paul, Richter, Florian, Lemmon, Gordon, Meiler, Jens, Baker, Dav

Journal:

Year:

2011

Language:

english

File:

PDF, 245 KB

english, 2011

29

Stereoselective reactions. II. Asymmetric synthesis of .BETA.-substituted aldehydes by michael reaction using chiral .ALPHA.,.BETA.-unsaturated aldimines.

HASHIMOTO, SHUNICHI, KOMESHIMA, NOBUYASU, YAMADA, SHUNICHI, KOGA, KENJI

Journal:

CHEMICAL & PHARMACEUTICAL BULLETIN

Year:

1979

File:

PDF, 580 KB

1979

30

3P098 Computational de novo design of "ideal" protein structures(Protein: Engineering,The 48th Annual Meeting of the Biophysical Society of Japan)

Koga, Nobuyasu, Koga, Rie, Baker, David

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 238 KB

english, 2010

31

1P088 Principles for designing ideal protein structures(01F. Protein:Engineering,Poster)

Koga, Nobuyasu, Koga(Tatsumi), Rie, Liu, Gaohua, Xiao, Rong, Montelione, Gaetano T., Baker, David

Journal:

Seibutsu Butsuri

Year:

2013

Language:

english

File:

PDF, 727 KB

english, 2013

32

Asymmetric michael reaction via chiral α,β-unsaturated aldimines

Shun-ichi Hashimoto, Nobuyasu Komeshima, Shun-ichi Yamada, Kenji Koga

Journal:

Tetrahedron Letters

Year:

1977

Language:

english

File:

PDF, 129 KB

english, 1977

33

1P089 Theoretical design of functionalized proteins with ideal scaffold(01F. Protein:Engineering,Poster)

Kosugi, Takahiro, Koga, Nobuyasu, Tatsumi-Koga, Rie, Baker, David

Journal:

Seibutsu Butsuri

Year:

2013

Language:

english

File:

PDF, 727 KB

english, 2013

34

3SBA-01 Toward design of molecular motors(Rise of molecular machines,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 728 KB

english, 2014

35

2P-097 De novo computational design of "ideal" protein structure(The 46th Annual Meeting of the Biophysical Society of Japan)

Koga, Nobuyasu, Tatsumi-Koga, Rie, Baker, David

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 294 KB

english, 2008

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